GWAS workshop @VT
June 24-26, 2019
Instructors
- Malachy Campbell - Virginia Polytechnic Institute and State University [WWW]
- Gota Morota - Virginia Polytechnic Institute and State University
Guest Instructor
- Haipeng Yu - Virginia Polytechnic Institute and State University [WWW]
Dates and Location
- June 24-26, 2019
- 246A Smyth Hall, Virginia Tech, Blacksburg, VA.
Schedule
- June 24 (Mon.) Single marker regression GWAS
- 9:00-10:30 - Kinship & Linear mixed models [HTML]
- 10:30-12:00 - Quality control, Single marker regression GWAS, & Multiple testing [GitHub]
- 12:00-13:30 - Lunch break
- 13:30-15:30 - Lab: Single marker regression GWAS using rrBLUP and GAPIT [GitHub]
- June 25 (Tue.) Bayesian whole-genome regression GWAS
- 9:00-10:30 - Bayesian whole-genome regression (Bayesian alphabet) in a nutshell [HTML]
- 10:30-12:00 - Bayesian whole-genome regression for GWAS [GitHub]
- 12:00-13:30 - Lunch break
- 13:30-15:30 - Lab: Bayesian whole-genome regression GWAS using rrBLUP, gaston, and BGLR [GitHub]
- June 26 (Wed.) Advanced topics: Genetic analysis of image-based high-throughput phenotyping data
- 9:00-10:00 - Time series GWAS [GitHub]
- 10:00-11:00 - Bayesian confirmatory factor analysis and Bayesian network for high-dimensional phenotypic data [HTML]
- 11:00-12:00 - Network GWAS using structural equation model [HTML]
- 12:00-13:30 - Lunch break
- 13:30-15:30 - Lab: Bring your own GWAS data