ASCI 896 Statistical Genomics

One locus to the infinitesimal model - 2

http://www.nature.com/news/reproducibility-1.17552

Many journals now require authors to make their data publicly available prior to publication.

• Genetics
• Genome Research
• Heredity
• PLoS Genetics

and more.

Some journals also encourage authors to share their software or code used for analysis

Examples

• README file
• GNU make
• Git/GitHub
• Python + Jupyter Notebook
• R markdown + knitr

https://cran.r-project.org/web/views/ReproducibleResearch.html

Grading policies

• reproducible data analysis
• documentation of code
• interpretation of results

I encourage you to discuss with people in the class but do not share code

• openintro
• Try R (1)
• Try R (2)
• statsTeachR
• swirl