What we will cover

• genomic relationships
• genomic selection
• genome-enabled prediction
• additive and non-additive effects
• genome-wide association study
• genomic heritability
• statistical genomics of disease
• population stratification
• multiple-trait model
• causal inference

• hands-on analysis of simulated and real genomic data
• no mideterm exam
• final exam
• 15 minutes presentation
• Rstudio + R Markdown + knitr
• Jupyter Notebook

• http://morotalab.org/asci896-2017/ASCI896.html

• Inference
  • effect of allele substitution
  • variance component estimation
• Prediction
  • prediction of yet-to-be observed phenotypes
  • genomic selection

• http://www.pnas.org/content/112/45/13892.abstract