Homework assignments

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# Homework assignments
## Reproducible research
### Gota Morota
### 2017/01/19

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# Scientific journals

Many journals now require authors to make their **data** publicly available prior to publication.

- [Genetics](http://genetics.org/)
- [Genome Research](http://genome.cshlp.org/)
- [Heredity](http://www.nature.com/hdy/index.html)
- [PLoS Genetics](http://journals.plos.org/plosgenetics/)

and more.

Some journals also encourage authors to share their **software or code** used for analysis

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# Reproducible research tools

Examples
- README file
- GNU make
- Git/GitHub
- Jupyter Notebook
- [R markdown](http://rmarkdown.rstudio.com/) + [knitr](https://yihui.name/knitr/)

Submit .**Rmd** and .**html** files.

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# CRAN Task View: Reproducible Research
 [https://cran.r-project.org/web/views/ReproducibleResearch.html](https://cran.r-project.org/web/views/ReproducibleResearch.html)

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# Homework assignments

Grading policies

- reproducible data analysis 
- documentation of code 
- interpretation of results

I encourage you to discuss with people in the class but **do not** share code

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# Online R Tutorials

- [Code School: Try R](http://tryr.codeschool.com)
- [Rabbit: Introduction to R](http://www.quantide.com/rabbit-introduction-to-r/)
- [swirl](http://swirlstats.com/)
- [statsTeachR](http://www.statsteachr.org/)
- [The R Inferno](http://www.burns-stat.com/documents/books/the-r-inferno/)
- [An Introduction to Statistical and Data Sciences via R](https://ismayc.github.io/moderndiver-book/)