QGJC

Fall 2015

2015-09-03T00:00:00+00:00

We meet Mondays at 2pm in room A221.

Monday, December 14, 2015

Lehermeier et al. (2015) Assessment of genetic heterogeneity in structured plant populations using multivariate whole-genome regression models. Genetics. DOI: 10.1534/genetics.115.177394 .

Monday, November 30, 2015

Aschard et al. (2015) Adjusting for heritable covariates can bias effect estimates in genome-wide association studies. Am J Hum Genet. DOI: 10.1016/j.ajhg.2014.12.021.

Monday, November 16, 2015

Gamazon et al. (2015) A gene-based association method for mapping traits using reference transcriptome data/ Nat Genet. DOI: 10.1038/ng.3367.

Monday, October 26, 2015

Gianola et al. (2015) Do molecular markers inform about pleiotropy? Genetics. 201:23-29 . DOI: 10.1534/genetics.115.179978.

Monday, October 12, 2015

Zhang et al. (2014) Improving the accuracy of whole genome prediction for complex traits using the results of genome wide association studies. PLoS ONE. 9:e93017. DOI: 10.1371/journal.pone.0093017.

Monday, September 28, 2015

Ceron-Rojas et al. (2015) A genomic selection index applied to simulated and real data. G3: Genes, Genomes, Genetics. Early Online. DOI: 10.1534/g3.115.019869.

Monday, September 21, 2015

Tiezzi et al. (2015) Accounting for genotype by environment interaction in genomic predictions for US Holstein dairy cattle. Interbull Bulletin. No 49. Article.

Summer 2015

2015-05-01T00:00:00+00:00

We meet Fridays at 2pm in room A221.

Friday, July 24, 2015

Forneris et al. (2015). Quality control of genotypes using heritability estimates of gene content at the marker. Genetics. 199:675-681. DOI: 10.1534/genetics.114.173559.

Friday, July 17, 2015

Lopez-Cruz et al. (2015). Increased prediction accuracy in wheat breeding trials using a marker × environment interaction genomic selection model. G3. 5:569-582. DOI: 10.1534/g3.114.016097.

Friday, July 10, 2015

Kundaje et al. (2015). Integrative analysis of 111 reference human epigenomes. Nature. 518:317-330. DOI: 10.1038/nature14248.

Friday, July 3, 2015

No QGJC. Enjoy Holiday.

Friday, June 26, 2015

No QGJC

Friday, June 19, 2015

Moser et al. (2015). Simultaneous discovery, estimation and prediction analysis of complex traits using a bayesian mixture model. PLOS Genet. 11:e1004969. DOI: 10.1371journal.pgen.1004969.

Friday, June 12, 2015

Bermingham et al. (2015). Application of high-dimensional feature selection: evaluation for genomic prediction in man. Sci Rep. 5:10312. DOI: 10.1038/srep10312.

Friday, June 5, 2015

Li et al. (2013). Integrative eQTL-based analyses reveal the biology of breast cancer risk loci. Cell. 152:633-641. DOI: 10.1016/j.cell.2012.12.034.

Friday, May 29, 2015

Zhang et al. (2015). Accuracy of whole-genome prediction using a genetic architecture-enhanced variance-covariance matrix. G3 (Bethesda). 5:615-627. DOI: 10.1534/g3.114.016261.

Spring 2015

2015-01-19T00:00:00+00:00

We meet Thursdays at 2pm in room A221.

Thursday, April 30, 2015

Vazquez et al. (2015). Assessment of Whole-Genome Regression for Type II Diabetes. PLOS ONE. 10:e0123818.

Thursday, April 23, 2015

Zhang and Pan. (2015). Principal component regression and linear mixed model in association analysis of structured samples: competitors or complements?. Genet Epidemiol. 39:149-155.

Friday, April 17, 2015

Varona et al. (2015). A bayesian model for the analysis of transgenerational epigenetic variation. G3 (Bethesda). 4:477-485.

Thursday, April 9, 2015

Montinaro et al. (2015). Unravelling the hidden ancestry of American admixed populations. Nat Commun. 6:6596.

Thursday, April 2, 2015

Akdemir and Jannink. (2015). Locally epistatic genomic relationship matrices for genomic association and prediction. Genetics. 199:857-871.

Thursday, March 26, 2015

Spring Break

Thursday, March 19, 2015

Gorjanc et al. (2015). Potential of genotyping-by-sequencing for genomic selection in livestock populations. Genet Sel Evol. 47:12.

Thursday, March 12, 2015

Bulik-Sullivan et al. (2015). LD Score regression distinguishes confounding from polygenicity in genome-wide association studies. Nat Genet. 47:291–295.

Thursday, March 5, 2015

Takagi et al. (2015). Predicting the Phenotypic Values of Physiological Traits Using SNP Genotype and Gene Expression Data in Mice. PLOS ONE. 9(12):e115532.

Thursday, February 26, 2015

Zhang et al. (2015). Genomic prediction in biparental tropical maize populations in water-stressed and well-watered environments using low-density and GBS SNPs. Heredity. 114:291–299.

Thursday, February 19, 2015

Zhu et al. (2015). Dominance Genetic Variation Contributes Little to the Missing Heritability for Human Complex Traits. Am J Hum Genet. Early View.

Thursday, February 12, 2015

Berger et al. (2015). Effectiveness of Shrinkage and Variable Selection Methods for the Prediction of Complex Human Traits using Data from Distantly Related Individuals. Ann Hum Genet. Early View.

Thursday, February 5, 2015

Brard and Ricard. (2015). Is the use of formulae a reliable way to predict the accuracy of genomic selection? J Anim Breed Genet. Early View.

Thursday, January 29, 2015

Onogi et al. (2015). Exploring the areas of applicability of whole-genome prediction methods for Asian rice (Oryza sativa L.). Theor Appl Genet. 128:41-53.

Thursday, January 22, 2015

Speed and Balding. (2015). Relatedness in the post-genomic era: is it still useful? Nat Rev Genet. 16:33-44.