Quantitative Genetics and Genomics Workshop @ESALQ
May 21-25, 2018
Instructors
- Gota Morota - University of Nebraska-Lincoln
- Jeremy Howard - University of Nebraska-Lincoln
- Matt Spangler - University of Nebraska-Lincoln
Dates and Location
- May 21-25, 2018
- Pavilhao de Zootecnia Nao Ruminantes
- University of Sao Paulo / ESALQ, Piracicaba, Sao Paulo, Brazil
Schedule
- May 21st (Mon.)
- 9:00-10:30 - Genomic Selection in Practice: Examples from the U.S. beef and swine industries
- 10:30-12:00 - Genomic best linear unbiased prediction (GBLUP) [HTML]
- 12:00-13:30 - Lunch Break
- 13:30-16:30 - Lab: GBLUP [R]
- May 22nd (Tue.)
- 9:00-10:30 - Introduction to single-step methods and evaluations
- 10:30-12:00 - Genotyping strategies and reducing the complexity of single step GBLUP (ssGBLUP)
- 12:00-13:30 - Lunch Break
- 13:30-16:30 - Lab: ssGBLUP
- May 23rd (Wed.)
- 9:00-10:30 - Deterministic formulas for genomic prediction [HTML]
- 10:30-12:00 - Lab: Shiny genomic prediction accuracy simulator [R]
- May 24th (Thu.)
- 9:00-10:30 - Introduction to inbreeding and heterosis
- 10:30-12:00 - Genomic inbreeding
- 12:00-13:30 - Lunch Break
- 13:30-16:30 - Genomic inbreeding and runs of homozygosity
- May 25th (Fri.)
- 9:00-10:30 - GO Enrichment analysis
- 10:30-12:00 - MeSH Enrichment analysis [HTML]
- 12:00-13:30 - Lunch Break
- 13:30-16:30 - Lab: GO / MeSH Enrichment Analysis in Bioconductor [R]