Statistical Methods for Omics-assisted Breeding Hands-on Workshop @UT
November 12-15, 2018
Official website
Instructors
- Malachy Campbell - University of Nebraska-Lincoln
- Hiroyoshi Iwata - University of Tokyo
- Diego Jarquin - University of Nebraska-Lincoln
- Gota Morota - Virginia Polytechnic Institute and State University
- Emi Tanaka - University of Sydney
- Jessica Tressou - INRA
Dates and Location
- November 12-15, 2018
- Yayoi Auditorium Annex - Seihoku Gallary & Food Science Building Nakashima Hall
- The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo, Japan
Schedule
- November 12th (Mon.)
- 9:00-10:10 - Basic statistical computing in R - R Markdown
- 10:10-10:20 - Break
- 10:20-12:00 - Data visualization in R - ggplot2 + desplot
- 12:00-13:00 - Lunch Break
- 13:00-14:00 - Introduction to Quantitative Genetics [HTML1][HTML2]
- 14:00-14:10 - Break
- 14:10-15:40 - Least squares and Linear mixed models
- 15:40-15:50 - Break
- 17:30-19:30 - Social mixer @ YAYOI AUDITORIUM - ANNEX
- November 13th (Tue.)
- 9:00-9:30 - Genomic heritability
- 9:30-9:40 - Break
- 9:40-12:00 - GWAS
- 12:00-13:30 - Lunch Break
- 13:00-14:00 - GBLUP and RR-BLUP [HTML]
- 14:00-15:00 - Bayesian alphabet
- 15:00-15:10 - Break
- 15:10-16:10 - Classical GxE including FW, AMMI, and biplot
- 16:10-16:50 - GxE covariates
- November 14th (Wed.)
- 9:00-11:00 - Introduction to ASReml
- 11:00-11:10 - Break
- 11:10-12:00 - Theoretical part of factor analytic model
- 12:00-13:00 - Lunch
- 13:00-14:00 - Application of factor analytic model to GxE analysis with ASReml
- 14:00-14:10 - Break
- 14:10-15:10 - Bayesian factor analytic model
- 15:10-15:20 - Break
- 15:20-16:20 - Spatial analysis of Gilmour et al. (1997)
- 16:20-17:00 - Introduction to R-INLA
- November 15th (Thu.)
- 9:00-12:00 - Multi-trait methods for GWAS and genomic prediction [HTML1][HTML2]
- 12:00-13:00 - Lunch
- 13:00-15:00 - Bayesian network
- 15:00-15:10 - Break
- 15:10-16:50 - Experimental design + Optimal designs
Misc
- Introduction to mixed model equations [HTML]